PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016785
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 252aa    MW: 27441.3 Da    PI: 4.3727
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016785genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-1754104155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+++Aa+a++ a++ ++g
  Cla016785  54 PSYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATPDMAARAHDVAALTIKG 104
                57*****998.**********854...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.60E-3054114No hitNo description
PfamPF008478.8E-1254104IPR001471AP2/ERF domain
PROSITE profilePS5103222.57655112IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2055113IPR016177DNA-binding domain
SMARTSM003803.8E-3655118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-3155113IPR001471AP2/ERF domain
PRINTSPR003671.1E-95667IPR001471AP2/ERF domain
PRINTSPR003671.1E-97894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MADATVPETD SGGSSNSWSS SSSSTSCSIS SPSKQVGSRT SSKRSRESSN NRHPSYRGVR  60
MRAWGKWVSE IREPKKKSRI WLGTFATPDM AARAHDVAAL TIKGNSAILN FPELAASLPR  120
PASSSPRDVQ SAAALAASMQ LPDVVSPPPP PPPPPSSPPF SSSSELDEST PEELSEIVVL  180
PSLGTGYEES AESVTEFVFD EWQCSYEPWD QQNQSSKEEE EEAYEYFIDQ MAMAEKECVI  240
PTALFQPLPF SW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1556112360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139438.11e-115PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ9LYD35e-55DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0A0LFU74e-75A0A0A0LFU7_CUCSA; Uncharacterized protein
STRINGGLYMA05G35741.14e-53(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-35ERF family protein